Oh wow I remember Star Control 3! I think I got that game for free from a PC Gamer Magazine demo disc or something like that. I loved it but never finished it. The alien races where so unique and interesting! I loved saving the dog aliens by paying off their debts. Their ships were insanely good in combat.

I remember there was a conversation event where you can convince the bad guys to let you join them! And then the game ends and it just says you died. Good times.