Yes. One place in space has different temperatures. I would assume even individual particles are not distributed by a Maxwell distribution, so the concept of temperature is hard to apply. The background radiation has one temperature. If you add the sun, however, you already have a problem as the sun radiation is not in thermal equilibrium. So depending on how you look at it, you get different temperatures. The particles have a high energy, so also a high temperature. But they are so rare, that radiation is the dominant mode of heat transfer and determines the temperature of a thermometer placed in space.